SLIF (Subcellular Location Image Finder) extracts information about protein subcellular locations from figure-caption pairs in biological literature. The Subcellular Location Image Finder - Extracting Information from Text and Images in Biological Journal Articles It also provides optimized performance to handle large-scale networks with millions nodes and edges. It integrates the context (e.g., modular activity) and the hierarchical organization of cellular agents (e.g., molecules and complexes) in addition to their interactions. VisANT is an integrative platform for multiple-scale visualization and modeling of biological networks/pathways. Presented by: Zhenjun Hu, Boston University, US VisANT: an integrative platform for multiple-scale visualization and Fiesta provides features allowing for data sharing, online job invocation and tracking,Ī number of useful analysis features, and a friendly web interface. Implementing and exposing sequence analysis features. We demonstrate Fiesta, a genomics web application that provides a comprehensive and extensible framework for Presented by: Kannan Vijayan and Dustin Cram, Plant Biotechnology Institute, National Research Council of Canada, CA We will demonstrate these web-based resources for protein knowledge discovery.įiesta: An Interactive Sequence Management and Analysis Framework ID mapping, text mining (information extraction, entity recognition), and protein annotation (protein entries, family classification). Presented by: Zhang-Zhi Hu, Anastasia Nikolskaya, Georgetown University Medical Center, USīioinformatics resources for protein analysis, including databases and tools tailored for proteomics (expression data, unique proteins lists), PIR Resources for Protein Knowledge Discovery Through BioMart web services as an on-going initiative by the EMBRACE project. The unified presentation and interoperability of these diverse resources is made possible Large quantities of biological data generated byĭifferent research centres have been exposed with a variety of programmatic interfaces. Fly, chicken and Arabidopsis Reactome databases are under development. Tools for high-throughput data analysis and data mining, and data are provided. Orthology-based inference of reactions is available for 22 species. Pathways are authored and peer-reviewed by domain experts. Reactome is a curated, open source database of human biological processes. Presented by: Gopal Gopinathrao, Cold Spring Harbor Laboratory, US InterPro integrates data from ten signature databases and five structural databases, providing information on protein families, domains, repeats and sites in which identifiable features found in known proteins can be applied to novel protein sequences. This demonstration explores the wealth of protein annotation data available through the INTERPRO database ( ). Presented by: Jennifer McDowall, EMBL-EBI, UK Join us for a tour through the multitude of toolsĪvailable in PredictProtein as we show you how to leverage the service in your day-to-day work. PredictProtein is a comprehensive sequenceĪnalysis server that incorporates an increasing number of services and databases Presented by: Guy Yachdav, Laszlo Kajan, Columbia University, US PredictProtein - Beyond Secondary Structure Prediction To design complex genetic constructs that will be presented through a software demonstration. The GenoCAD environment (provides a structured and rigorous methodology for organizations We are creating the infrastructure making it possible for non-specialist to design large genetic constructs used in basicīiological research or product development programs. Presented by: Jean Peccoud, Virginia Tech, US GenoCAD: Computer Assisted Design of genetic constructs
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